User Information
Using Bio-Formats with ImageJ and Fiji
The following sections explain the features of Bio-Formats and how to use it within ImageJ and Fiji:
See also
Command line tools
The Bio-Formats Command line tools (bftools.zip) provide a complete package for carrying out a variety of tasks:
- Command line tools overview
- Displaying images and metadata
- Converting a file to different format
- Validating XML in an OME-TIFF
- Editing XML in an OME-TIFF
- List formats by domain
- List supported file formats
- Display file in ImageJ
- Format XML data
- Create a high-content screen for testing
- “Precompressed” tiles
See also
OMERO
OMERO 5 uses Bio-Formats to read original files from over 140 file formats. Please refer to the OMERO documentation for further information.
Many other software packages can use Bio-Formats to read and write microscopy formats (click on the package for further details):