Using Bio-Formats in R
OME does not currently provide an R implementation for Bio-Formats. However, there are options provided by the community:
Bioconductor RBioFormats
The RBioFormats project from Bioconductor provides an R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RBioFormats")
# To view documentation for the version of this package installed in your system
browseVignettes("RBioFormats")
For further details and examples of how to use the package, please see the API documentation